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Data production and analysis in population genomics : methods and protocols / edited by François Pompanon and Aurélie Bonin.

Contributor(s): Material type: TextTextSeries: Methods in Molecular Biology - Humana Press ; 888. | Springer protocolsPublication details: New York : Humana Press, © 2012.Description: XI, 337 stron : ilustracje ; 27 cmISBN:
  • 9781617798696
  • 161779869X
  • 9781617798702
Contents:
Sampling in landscape genomics / Stéphanie Manel, Cécile H. Albert, and Nigel G. Yoccoz -- OligoTag : a program for designing sets of tags for next-generation sequencing of multiplexed samples / Eric Coissac -- SNP discovery in non-model organisms using 454 next generation sequencing / Christopher W. Wheat -- In silico fingerprinting (ISIF) : a user-friendly in silico AFLP program / Margot Paris and Laurence Després -- Diversity arrays technology : a generic genome profiling technology on open platforms / Andrzej Kilian ... [et al.] -- Two methods to easily obtain nucleotide sequences from AFLP loci of interest / Margot Paris ... [et al.] -- Roche Genome Sequencer FLX based high-throughput sequencing of ancient DNA / David E. Alquezar-Planas and Sarah L. Fordyce -- Preparation of normalized cDNA libraries for 454 titanium transcriptome sequencing / Zhao Lai ... [et al.] -- RAD paired-end sequencing for local de novo assembly and SNP discovery in non-model organisms / Paul D. Etter and Eric Johnson -- Automated scoring of AFLPs using RawGeno v 2.0, a free R CRAN library / Nils Arrigo, Rolf Holderegger, and Nadir Alvarez -- Haplotype inference / Olivier Delaneau and Jean-François Zagury -- Allele identification in assembled genomic sequence datasets / Katrina M. Dlugosch and Aurélie Bonin -- Multiple testing in large-scale genetic studies / Matthieu Bouaziz, Marine Jeanmougin, and Mickaël Guedj -- Population genomic analysis of model and nonmodel organisms using sequenced RAD tags / Paul A. Hohenlohe, Julian Catchen, and William A. Cresko -- Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP / Andrés Pérez-Figueroa, Silvia T. Rodríguez-Ramilo, and Armando Caballero -- DetSel : an R-package to detect marker loci responding to selection / Renaud Vitalis -- Use of qualitative environmental and phenotypic variables in the context of allele distribution models : detecting signatures of selection in the genome of Lake Victoria cichlids / Stéphane Joost ... [et al.] -- Genomic scan as a tool for assessing the genetic component of phenotypic variance in wild populations / Carlos M. Herrera.
Item type: KSIĄŻKA
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Biblioteka Instytutu Botaniki im. W. Szafera PAN III 7471 Available 1817061739
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SKRÓCONY OPIS BIBLIOGRAFICZNY SPORZĄDZONY W LOKALNYM KATALOGU BIBLIOTEKI IB PAN.

Includes bibliographical references and index.

Sampling in landscape genomics / Stéphanie Manel, Cécile H. Albert, and Nigel G. Yoccoz -- OligoTag : a program for designing sets of tags for next-generation sequencing of multiplexed samples / Eric Coissac -- SNP discovery in non-model organisms using 454 next generation sequencing / Christopher W. Wheat -- In silico fingerprinting (ISIF) : a user-friendly in silico AFLP program / Margot Paris and Laurence Després -- Diversity arrays technology : a generic genome profiling technology on open platforms / Andrzej Kilian ... [et al.] -- Two methods to easily obtain nucleotide sequences from AFLP loci of interest / Margot Paris ... [et al.] -- Roche Genome Sequencer FLX based high-throughput sequencing of ancient DNA / David E. Alquezar-Planas and Sarah L. Fordyce -- Preparation of normalized cDNA libraries for 454 titanium transcriptome sequencing / Zhao Lai ... [et al.] -- RAD paired-end sequencing for local de novo assembly and SNP discovery in non-model organisms / Paul D. Etter and Eric Johnson -- Automated scoring of AFLPs using RawGeno v 2.0, a free R CRAN library / Nils Arrigo, Rolf Holderegger, and Nadir Alvarez -- Haplotype inference / Olivier Delaneau and Jean-François Zagury -- Allele identification in assembled genomic sequence datasets / Katrina M. Dlugosch and Aurélie Bonin -- Multiple testing in large-scale genetic studies / Matthieu Bouaziz, Marine Jeanmougin, and Mickaël Guedj -- Population genomic analysis of model and nonmodel organisms using sequenced RAD tags / Paul A. Hohenlohe, Julian Catchen, and William A. Cresko -- Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP / Andrés Pérez-Figueroa, Silvia T. Rodríguez-Ramilo, and Armando Caballero -- DetSel : an R-package to detect marker loci responding to selection / Renaud Vitalis -- Use of qualitative environmental and phenotypic variables in the context of allele distribution models : detecting signatures of selection in the genome of Lake Victoria cichlids / Stéphane Joost ... [et al.] -- Genomic scan as a tool for assessing the genetic component of phenotypic variance in wild populations / Carlos M. Herrera.

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